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Azad, R., Rouhier, L., & Cohen-Adad, J. (2021, September). Stacked Hourglass Network with a Multi-level Attention Mechanism: Where to Look for Intervertebral Disc Labeling [Paper]. 12th International Workshop on Machine Learning in Medical Imaging (MLMI 2021). External link
Barletta, V., Herranz, E., Treaba, C. A., Mehndiratta, A., Ouellette, R., Mangeat, G., Granberg, T., Sloane, J. A., Klawiter, E., Cohen-Adad, J., & Mainero, C. (2021). Quantitative 7-Tesla Imaging of Cortical Myelin Changes in Early Multiple Sclerosis. Frontiers in Neurology, 12, 714820 (10 pages). External link
Bautin, P., & Cohen-Adad, J. (2021). Minimum detectable spinal cord atrophy with automatic segmentation: Investigations using an open-access dataset of healthy participants. Neuroimage-Clinical, 32, 102849 (10 pages). External link
Boshkovski, T., Cohen-Adad, J., Misic, B., Arnulf, I., Corvol, J.-C., Vidailhet, M., Lehéricy, S., Stikov, N., & Mancini, M. (2021). The Myelin-Weighted Connectome in Parkinson's Disease. Movement Disorders, 37(4), 724-733. External link
Boshkovski, T., Kocarev, L., Cohen-Adad, J., Mišić, B., Lehéricy, S., Stikov, N., & Mancini, M. (2021). The R1-weighted connectome: complementing brain networks with a myelin-sensitive measure. Network Neuroscience, 5(2), 358-372. External link
Boudreau, M., Poline, J.-B., Bellec, P., & Stikov, N. (2021). On the open-source landscape of PLOS Computational Biology. PLOS Computational Biology, 17(2), 3 pages. Available
Carandini, T., Mancini, M., Bogdan, I., Rae, C. L., Barritt, A. W., Clerico, M., Sethi, A., Harrison, N., Rashid, W., Scarpini, E., Galimberti, D., Bozzali, M., & Cercignani, M. (2021). In vivo evidence of functional disconnection between brainstem monoaminergic nuclei and brain networks in multiple sclerosis. Multiple Sclerosis and Related Disorders, 56, 103224 (8 pages). External link
Carandini, T., Mancini, M., Bogdan, I., Rae, C. L., Barritt, A. W., Sethi, A., Harrison, N., Rashid, W., Scarpini, E., Galimberti, D., Bozzali, M., & Cercignani, M. (2021). Disruption of brainstem monoaminergic fibre tracts in multiple sclerosis as a putative mechanism for cognitive fatigue: a fixel-based analysis. Neuroimage-Clinical, 30, 102587 (13 pages). External link
Casamitjana, A., Mancini, M., & Iglesias, J. E. (2021, September). Synth-by-Reg (SbR): Contrastive Learning for Synthesis-Based Registration of Paired Images [Paper]. 6th International Workshop on Simulation and Synthesis in Medical Imaging (SASHIMI 2021). External link
Cohen-Adad, J. (2021). Quantitative magnetic resonance imaging of spinal cord microstructure in adults with cerebral palsy. Developmental Medicine & Child Neurology, 63(8), 896-896. External link
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., de Sousa, P. L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Author Correction: Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers (vol 8, 219, 2021). Scientific Data, 8(1), 242 (1 page). Available
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., de Sousa, P. L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Generic acquisition protocol for quantitative MRI of the spinal cord. Nature Protocols, 16(10), 4611-4632. Available
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., de Sousa, P. L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers. Scientific Data, 8(1), 219 (17 pages). Available
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R., Barth, M., Battiston, M., Büchel, C., Budde, M. D., Callot, V., Combes, A. J.E., De Leener, B., Descoteaux, M., Sousa, P. L. , Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Author Correction: Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers. Scientific Data, 8(1), 251 (2 pages). Available
D'Astous, A., Topfer, R., Cereza, G., Alonso Ortiz, E., Craven-Brightman, L., Stockmann, J., & Cohen-Adad, J. (2021, May). Shimming-toolbox : an open-source software package for performing realtime B0 shimming experiments [Paper]. ISMRM & SMRT annual Meeting & exhibition (ISMRM 2021). External link
de la Colina, A. N., Badji, A., Robitaille-Grou, M.-C., Gagnon, C., Boshkovski, T., Lamarre-Cliche, M., Joubert, S., Gauthier, C. J., Bherer, L., Cohen-Adad, J., & Girouard, H. (2021). Associations Between Relative Morning Blood Pressure, Cerebral Blood Flow, and Memory in Older Adults Treated and Controlled for Hypertension. Hypertension, 77(5), 1703-1713. External link
Gau, R., Noble, S., Heuer, K., Bottenhorn, K. L., Bilgin, I. P., Yang, Y., Huntenburg, J. M., Bayer, J., Bethlehem, R. A. I., Rhoads, S. A., Vogelbacher, C., Borghesani, V., Levitis, E., Wang, H.-T., Bossche, S. V. D., Kobeleva, X., Legarreta, J. H., Guay, S., Atay, M. S., ... Forkel, S. J. (2021). Brainhack: Developing a culture of open, inclusive, community-driven neuroscience. Neuron, 109(11), 1769-1775. External link
Gros, C., Lemay, A., & Cohen-Adad, J. (2021). SoftSeg: Advantages of soft versus binary training for image segmentation. Medical Image Analysis, 71, 12 pages. External link
Gros, C., Lemay, A., Vincent, O., Rouhier, L., Bourget, M.-H., Bucquet, A., Cohen, P., & Cohen-Adad, J. (2021). Ivadomed : a medical imaging deep learning toolbox. Journal of Open Source Software, 6(58), 5 pages. External link
Lemay, A., Gros, C., Vincent, O., Liu, Y., Cohen, J. P., & Cohen-Adad, J. (2021, July). Benefits of Linear Conditioning with Metadata for Image Segmentation [Presentation]. In 4th Conference on Medical Imaging with Deep Learning (MIDL 2021). Published in Proceedings of Machine Learning Research, 143. External link
Lemay, A., Gros, C., Zhuo, Z., Zhang, J., Duan, Y., Cohen-Adad, J., & Liu, Y. (2021). Automatic multiclass intramedullary spinal cord tumor segmentation on MRI with deep learning. NeuroImage - Clinical, 31, 9 pages. Available
Lousada, E., Boudreau, M., Cohen-Adad, J., Oumesmar, B. N., Burguiere, E., & Schreiweis, C. (2021). Reduced Axon Calibre in the Associative Striatum of the Sapap3 Knockout Mouse. Brain Sciences, 11(10), 1353 (16 pages). External link
Maier, O., Baete, S. H., Fyrdahl, A., Hammernik, K., Harrevelt, S., Kasper, L., Karakuzu, A., Loecher, M., Patzig, F., Tian, Y., Wang, K., Gallichan, D., Uecker, M., & Knoll, F. (2021). CG-SENSE revisited: Results from the first ISMRM reproducibility challenge. Magnetic Resonance in Medicine, 85(4), 1821-1839. External link
Mancini, M., Tian, Q., Fan, Q., Cercignani, M., & Huang, S. Y. (2021). Dissecting whole-brain conduction delays through MRI microstructural measures. Brain Structure and Function, 226(8), 2651-2663. Available
Ost, K., Jacobs, W. B., Evaniew, N., Cohen-Adad, J., Anderson, D., & Cadotte, D. W. (2021). Spinal cord morphology in degenerative cervical myelopathy patients ; assessing key morphological characteristics using Mmchine vision tools. Journal of Clinical Medicine, 10(4), 18 pages. Available
Shahrampour, S., De Leener, B., Alizadeh, M., Middleton, D., Krisa, L., Flanders, A.E., Faro, S.H., Cohen-Adad, J., & Mohamed, F.B. (2021). Atlas-based quantification of DTI measures in a typically developing pediatric spinal cord. American Journal of Neuroradiology, 42(9), 1727-1734. Available
Tinnermann, A., Büchel, C., & Cohen-Adad, J. (2021). Cortico-spinal imaging to study pain. NeuroImage, 224, 17 pages. Available
Vallotton, K., David, G., Hupp, M., Pfender, N., Cohen-Adad, J., Fehlings, M. G., Samson, R. S., Wheeler-Kingshott, C. A. M. G., Curt, A., Freund, P., & Seif, M. (2021). Tracking White and Gray Matter Degeneration along the Spinal Cord Axis in Degenerative Cervical Myelopathy. Journal of Neurotrauma, 38(21), 2978-2987. External link
Valošek, J., Labounek, R., Horák, T., Horáková, M., Bednařík, P., Keřkovský, M., Kočica, J., Rohan, T., Lenglet, C., Cohen-Adad, J., Hluštík, P., Vlčková, E., Kadaňka, Z., Bednařík, J., & Svatkova, A. (2021). Diffusion magnetic resonance imaging reveals tract‐specific microstructural correlates of electrophysiological impairments in non‐myelopathic and myelopathic spinal cord compression. European Journal of Neurology, 28(11), 3784-3797. Available
Valošek, J., Labounek, R., Horák, T., Horáková, M., Bednařík, P., Keřkovský, M., Kočica, J., Rohan, T., Lenglet, C., Cohen-Adad, J., Hluštík, P., Vlčková, E., Kadaňka, Z., Bednařík, J., & Svatkova, A. (2021). Erratum: Diffusion magnetic resonance imaging reveals tract‐specific microstructural correlates of electrophysiological impairments in non‐myelopathic and myelopathic spinal cord compression. European Journal of Neurology, 29(8), 2551-2551. External link
Wong, A. L., Hricz, N., Malapati, H., von Guionneau, N., Wong, M., Harris, T., Boudreau, M., Cohen-Adad, J., & Tuffaha, S. (2021). A simple and robust method for automating analysis of naïve and regenerating peripheral nerves. PLOS One, 16(7), 14 pages. Available