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Alonso Ortiz, E., Gros, C., Foias, A., Abramovic, M., Ameitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Buchel, C., Budde, M., Callot, V., De Leener, B., Descoteaux, M., De Sousa, P. L., Dostal, M., Doyon, J., Dvorak, A., ... Cohen-Adad, J. (2020, August). Quantitative MRI of the spinal cord : reproducibility and normative values across 40 sites [Paper]. ISMRM & SMRT annual Meeting & Exhibition (ISMRM 2020). External link
Bédard, S., Enamundram, M. V. N. K., Valošek, J., & Cohen-Adad, J. (2025, May). Minimum sample size to detect spinal cord atrophy with automatic soft segmentation [Paper]. ISMRM & ISMRT Annual Meeting (ISMRM-ISMRT 2025), Honolulu, Hawaii, USA (1 page). Published in Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Bédard, S., Valošek, J., Seif, M., Curt, A., Schading-Sassenhausen, S., Pfender, N., Freund, P., Hupp, M., & Cohen-Adad, J. (2025). Normalizing spinal cord compression measures in degenerative cervical myelopathy. The Spine Journal, 25(9), 1951-1963. Available
Bédard, S., Valošek, J., Nobre Leal de Souza Oliva, V., Weber, K. A., & Cohen-Adad, J. (2025). Rootlets-based registration to the spinal cord PAM50 template. Imaging Neuroscience, 21 pages. External link
Bédard, S., Valošek, J., Weber I. I., K. A., & Cohen-Adad, J. (2025, May). Rootlets-informed registration to a spinal cord template: proof-of-concept [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Honolulu, HI, USA. External link
Benveniste, P.-L., Valošek, J., Chen, M., Molinier, N., Lee, L. E., Prat, A., Vavasour, Z., Tam, R., Traboulsee, A., Kolind, S., Oh, J., & Cohen-Adad, J. (2024, May). Automatic segmentation of spinal cord multiple sclerosis lesions across multiple sites, contrasts and vendors [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Bouthillier, M., Valošek, J., Enamundram, N. K., Guay-Paquet, M., Guenther, N., Rotem-Kohavi, N., Humphreys, S., Christie, S., Fehlings, M., Kwon, B. K., Mac-Thiong, J.-M., Phan, P., Cadotte, D., & Cohen-Adad, J. (2024, February). Building of a national Canadian magnetic resonance imaging repository for deep-learning segmentation of edema and hemorrhage [Abstract]. 24th Annual Scientific Conference of the Canadian Spine Society, Whistler, B.C., Canada. Published in Canadian Journal of Surgery, 67(6suppl1). External link
Cohen-Adad, J., Guenther, N., Foias, A., Valošek, J., Guay-Paquet, M., Bédard, S., Bautin, P., Labounek, R., Newton, J., Molinier, N., Halchenko, Y., & Gros, C. (2025). spine-generic/data-multi-subject: r20250314 [Dataset]. External link
Craig, M., Guenther, N., Valošek, J., Bouthillier, M., Enamundram, N. K., Rotem-Kohavi, N., Humphreys, S., Christie, S., Fehlings, M., Kwon, B. K., Mac-Thiong, J.-M., Phan, P., Paquet, J., Guay-Paquet, M., Cohen-Adad, J., & Cadotte, D. (2024, February). Standardizing a magnetic resonance imaging library of acute traumatic spinal cord injury in Canada [Abstract]. 24th Annual Scientific Conference of the Canadian Spine Society, Whistler, B.C., Canada. Published in Canadian Journal of Surgery, 67(6suppl1). External link
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., de Sousa, P. L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Generic acquisition protocol for quantitative MRI of the spinal cord. Nature Protocols, 16(10), 4611-4632. Available
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R., Barth, M., Battiston, M., Büchel, C., Budde, M. D., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., Sousa, P. L. , Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Author Correction: Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers. Scientific Data, 8(1), 251 (2 pages). Available
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., de Sousa, P. L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Author Correction: Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers (vol 8, 219, 2021). Scientific Data, 8(1), 242 (1 page). Available
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., de Sousa, P. L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers. Scientific Data, 8(1), 219 (17 pages). Available
Enamundram, M. V. N. K., Bédard, S., Valošek, J., Aigner, C. S., Bannier, E., Bednařík, J., Callot, V., Combes, A., Curt, A., David, G., Eippert, F., Farner, L., G. Fehlings, M., Freund, P., Granberg, T., Granziera, C., Horn, U., Horák, T., Humphreys, S., ... Cohen-Adad, J. (2026). Monitoring morphometric drift in lifelong learning segmentation of the spinal cord. Imaging Neuroscience, 40 pages. External link
Enamundram, M. V. N. K., Valošek, J., Farner, L., Pfyffer, D., Schading, S., Lebret, A., Dávid, G., Smith, A. C., Weber, K. A., Seif, M., Freund, P., & Cohen-Adad, J. (2024, October). SCIsegV2: A Universal Tool for Segmentation of Intramedullary Lesions in Spinal Cord Injury [Paper]. 3rd International Workshop on Applications of Medical Artificial Intelligence (AMAI 2024/MICCAI 2024), Marrakesh, Morocco. Published in Lecture notes in computer science. External link
Enamundram, M. V. N. K., McGinnis, J., Würm, R., Ruehling, S., Graf, R., Valošek, J., Benveniste, P.-L., Lauerer, M., Talbott, J. F., Bakshi, R., Tauhid, S., Shepherd, T. M., Berthele, A., Zimmer, C., Hemmer, B., Rueckert, D., Wiestler, B., Kirschke, J. S., Cohen-Adad, J., & Mühlau, M. (2025). Automatic segmentation of spinal cord lesions in MS: A robust tool for axial T2-weighted MRI scans. Imaging Neuroscience, 3, 23 pages. External link
Enamundram, M. V. N. K., Valošek, J., Smith, A. C., Pfyffer, D., Schading-Sassenhausen, S., Farner, L., Weber, K. A., Freund, P., & Cohen-Adad, J. (2024). SCIseg: Automatic Segmentation of Intramedullary Lesions in Spinal Cord Injury on T2-weighted MRI Scans. Radiology Artificial Intelligence, 3 pages. External link
Hok, P., Valošek, J., Králová, T., Odstrčil, F., Sapieta, M., Král, M., Singh Nijhar, K., Arkhipova, A., Jasenská, M., Mareš, J., & Šín, M. (2025). Diffusion-weighted imaging and retinal oximetry as potential biomarkers of visual outcomes after optic neuritis. Scientific Reports, 15(1). External link
Horák, T., Horáková, M., Keřkovský, M., Dostál, M., Hluštı́k, P., Valošek, J., Svátková, A., Bednařík, P., Vlčková, E., & Bednařík, J. (2024). Evidence-based commentary on the diagnosis, management, and further research of degenerative cervical spinal cord compression in the absence of clinical symptoms of myelopathy. Frontiers in Neurology, 15, 9 pages. Available
Hok, P., Valošek, J., Svrcinova, T., Odstrcil, F., Rybáriková, M., Král, M., Nijhar, K., Arkhipova, A., Jasenská, M., Mares, J., & Sín, M. Diffusion-weighted imaging and retinal imaging predictors of functional outcome after the first episode of optic neuritis [Paper]. 40th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIM), Copenhagen, Denmark, September 18-20, 2024. Published in Multiple Sclerosis Journal, 30(3). External link
Krejčí, K., Chmelík, J., Bédard, S., Eippert, F., Horn, U., Callot, V., Cohen-Adad, J., & Valošek, J. (2026). Segmentation of spinal rootlets across MRI contrasts with RootletSeg. Scientific Reports. External link
Labounek, R., Bondy, M. T., Paulson, A., Bédard, S., Abramovic, M., Alonso-Ortiz, E., Atcheson, N., Barlow, L., Barry, R., Barth, M., Battiston, M., Büchel, C., Budde, M. D., Callot, V., Combes, A., De Leener, B., Descoteaux, M., Sousa, P. L. , Dostál, M., ... Nestrašil, I. (2025). Body size and intracranial volume interact with the structure of the central nervous system: A multi-center in vivo neuroimaging study. Imaging Neuroscience, 3, 31 pages. Available
Labounek, R., Bondy, M. T., Paulson, A. L., Bédard, S., Abramovic, M., Alonso Ortiz, E., Atcheson, N. T., Barlow, L. R., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M. D., Callot, V., Combes, A., De Leener, B., Descoteaux, M., Loureiro de Sousa, P., Dostál, M., ... Nestrašil, I. (2024). Body size interacts with the structure of the central nervous system: A multi-center in vivo neuroimaging study. bioRxiv, 32 pages. Available
Labounek, R., Valošek, J., Horák, T., Svátková, A., Bednařík, P., Vojtíšek, L., Horáková, M., Nestrašil, I., Lenglet, C., Cohen-Adad, J., Bednařík, J., & Hluštík, P. (2020). HARDI-ZOOMit protocol improves specificity to microstructural changes in presymptomatic myelopathy. Scientific Reports, 10(1), 17529 (19 pages). Available
Labounek, R., Valošek, J., Horák, T., Bednařík, P., Hok, P., Kudlička, P., Horáková, M., Kočica, J., Lenglet, C., Cohen-Adad, J., Nestrašil, I., Bednařík, J., & Hluštík, P. (2019, May). Novel HARDI-ZOOMit protocol detects changes in spinal cord microstructure in patients with asymptomatic non-myelopathic degenerative cervical spinal cord compression [Paper]. ISMRM 27th Annual Meeting & Exhibition, Montréal, Qc. External link
Nestrašil, I., Labounek, R., Nguyen, C., Krasovec, I., Valošek, J., Svátková, A., Cohen-Adad, J., Lenglet, C., & Whitley, C. (2020, February). Intraspinal space restriction at the occipito-cervical junction alters cervical spinal cord diffusion MRI metrics in mucopolysacharidoses patients [Abstract]. 16th Annual Research Meeting of the WORLDSymposium, Orlando, Florida. Published in Molecular Genetics and Metabolism, 129(2). External link
Nestrasil, I., Labounek, R., Nguyen, C., Krasovec, I., Valošek, J., Svatkova, A., Cohen-Adad, J., Lenglet, C., & Whitley, C. (2019, May). Cervical spinal cord diffusion MRI and intraspinal space restriction at the occipito-cervical junction in mucopolysacharidoses patients [Poster]. ISMRM 27th Annual Meeting & Exhibition, Montréal, Qc. External link
Rotem-Kohavi, N., Humphreys, S., Noonan, V. K., Cheng, C. L., Guay-Paquet, M., Bouthillier, M., Valošek, J., Naga Karthik, E., Lichtenstein, E., Guenther, N., Ost, K., Attabib, N., Hardisty, M., Badhiwala, J. H., Larouche, J., Pahuta, M., Christie, S., Fehlings, M. G., Fourney, D. R., ... Cadotte, D. W. (2025). Building a library of acute traumatic spinal cord injury images across Canada: a retrospective cohort study protocol. BMJ Open, 15(12), e106818 (12 pages). External link
Salmona, A., Bédard, S., Valošek, J., Ost, K., Bouthillier, M., Dávid, G., Seif, M., Curt, A., Pfender, N., Hupp, M., Freund, P., Horák, T., Kudlička, P., Bednařík, J., Muhammad, F., Smith, Z. A., & Cohen-Adad, J. (2026). Automated robust segmentation of the spinal canal on MRI. European Journal of Radiology Artificial Intelligence, 6, 100075-100075. External link
Valošek, J., Pfyffer, D., Enamundram, M. V. N. K., Farner, L., Schading-Sassenhausen, S., Freund, P., & Cohen-Adad, J. (2025). Automatic morphometry of spinal cord injury lesions. Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. Presented at ISMRM & ISMRT Annual Meeting (ISMRM-ISMRT 2025), Honolulu, Hawaii, USA. External link
Valošek, J., Mathieu, T., Schlienger, R., Kowalczyk, O. S., & Cohen-Adad, J. (2024, May). Automatic segmentation of spinal cord nerve rootlets [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Valošek, J., Enamundram, M. V. N. K., Bouthillier, M., Schading, S., Farner, L., Pfyffer, D., Smith, A. C., Weber, K. A. I. I., Freund, P., & Cohen-Adad, J. (2024, May). Automatic segmentation of T2-weighted hyperintense lesions in spinal cord injury [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Valošek, J., Bédard, S., Keřkovský, M., Rohan, T., & Cohen-Adad, J. (2024, May). Interactive database of spinal cord morphometry [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Valošek, J., Mathieu, T., Schlienger, R., Kowalczyk, O. S., & Cohen-Adad, J. (2024). Automatic segmentation of the spinal cord nerve rootlets. Imaging Neuroscience, 2. External link
Valošek, J., Bédard, S., Keřkovský, M., Rohan, T., & Cohen-Adad, J. (2024). A database of the healthy human spinal cord morphometry in the PAM50 template space. Imaging Neuroscience, 2, 15 pages. Available
Valošek, J., & Cohen-Adad, J. (2024). Reproducible Spinal Cord Quantitative MRI Analysis with the Spinal Cord Toolbox. Magnetic Resonance in Medical Sciences, rev.2023-0 (9 pages). External link
Valošek, J., Bédard, S., Keřkovský, M., Rohan, T., & Cohen-Adad, J. (2023). A database of the healthy human spinal cord morphometry in the PAM50 template space [Dataset]. External link
Valošek, J., Labounek, R., Horák, T., Horáková, M., Bednařík, P., Keřkovský, M., Kočica, J., Rohan, T., Lenglet, C., Cohen-Adad, J., Hluštík, P., Vlčková, E., Kadaňka, Z., Bednařík, J., & Svatkova, A. (2022). Corrigendum: Diffusion magnetic resonance imaging reveals tract‐specific microstructural correlates of electrophysiological impairments in non‐myelopathic and myelopathic spinal cord compression. European Journal of Neurology, 29(8), 2551-2551. External link
Valošek, J., Labounek, R., Horák, T., Horáková, M., Bednařík, P., Keřkovský, M., Kočica, J., Rohan, T., Lenglet, C., Cohen-Adad, J., Hluštík, P., Vlčková, E., Kadaňka, Z., Bednařík, J., & Svatkova, A. (2021). Diffusion magnetic resonance imaging reveals tract‐specific microstructural correlates of electrophysiological impairments in non‐myelopathic and myelopathic spinal cord compression. European Journal of Neurology, 28(11), 3784-3797. Available
Valošek, J., & Cohen-Adad, J. (2021, May). Variations of quantitative MRI metrics along the cervical spinal cord : multi-vendor, multi-center, multi-subject study [Presentation]. In 2021 Joint annual meeting ISMRM & ISMRT. External link
Warszawer, Y., Molinier, N., Valošek, J., Shirbint, E., Benveniste, P.-L., Granberg, T., Ouellette, R., Tsagkas, C., Callot, V., Mohamed, F. B., Bednařík, J., O'Grady, K. P., Achiron, A., & Cohen-Adad, J. (2025). TotalSpineSeg: Robust Spine Segmentation and Labeling Across Multiple MRI Contrasts. Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. Presented at ISMRM & ISMRT Annual Meeting (ISMRM-ISMRT 2025), Honolulu, Hawaii, USA. External link
Warszawer, Y., Molinier, N., Valošek, J., Shirbint, E., Benveniste, P.-L., Achiron, A., Eshaghi, A., & Cohen-Adad, J. (2024, May). Fully Automatic Vertebrae and Spinal Cord Segmentation Using a Hybrid Approach Combining nnU-Net and Iterative Algorithm [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
