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Labounek, R., Bondy, M. T., Paulson, A. L., Bédard, S., Abramovic, M., Alonso-Ortiz, E., Atcheson, N. T., Barlow, L. R., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M. D., Callot, V., Combes, A., Leener, B. D., Descoteaux, M., Loureiro de Sousa, P., Dostál, M., ... Nestrašil, I. (2024). Body size interacts with the structure of the central nervous system: A multi-center in vivo neuroimaging study. bioRxiv, 32 pages. External link
Le Troter, A., Laines Medina, N. J., Mchinda, S., Cohen-Adad, J., & Callot, V. (2023, June). AMU7T : a 3D qT1 and T2*w high-resolution in vivo template with refined white and gray matter parcellation dedicated to 7T spinal cord MR analyses [Presentation]. In ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. External link
Laine Medina, N. J., Gros, C., Cohen-Adad, J., Le Troter, A., & Callot, V. (2022, May). A multiclass deep-learning model with realistic data augmentation for improved 7T gray matter/spinal cord segmentation on patients and controls [Presentation]. In Joint annual Meeting ISMRM ESMRMB ISMRT, London, UK. External link
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., de Sousa, P. L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Generic acquisition protocol for quantitative MRI of the spinal cord. Nature Protocols, 16(10), 4611-4632. Available
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R., Barth, M., Battiston, M., Büchel, C., Budde, M. D., Callot, V., Combes, A. J.E., De Leener, B., Descoteaux, M., Sousa, P. L. , Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Author Correction: Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers. Scientific Data, 8(1), 251 (2 pages). Available
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., de Sousa, P. L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Author Correction: Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers (vol 8, 219, 2021). Scientific Data, 8(1), 242 (1 page). Available
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., de Sousa, P. L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers. Scientific Data, 8(1), 219 (17 pages). Available
Kerbrat, A., Gros, C., Badji, A., Bannier, É., Galassi, F., Combes, B., Chouteau, R., Labauge, P., Ayrignac, X., Carra-Dalliere, C., Maranzano, J., Granberg, T., Ouellette, R., Stawiarz, L., Hillert, J., Talbott, J., Tachibana, Y., Hori, M., Kamiya, K., ... Cohen-Adad, J. (2020). Multiple sclerosis lesions in motor tracts from brain to cervical cord: spatial distribution and correlation with disability. Brain, 143(7), 2089-2105. External link
Alonso Ortiz, E., Gros, C., Foias, A., Abramovic, M., Ameitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Buchel, C., Budde, M., Callot, V., De Leener, B., Descoteaux, M., De Sousa, P. L., Dostal, M., Doyon, J., Dvorak, A., ... Cohen-Adad, J. (2020, August). Quantitative MRI of the spinal cord : reproducibility and normative values across 40 sites [Paper]. ISMRM & SMRT annual Meeting & Exhibition (ISMRM 2020). External link
Gros, C., De Leener, B., Badji, A., Maranzano, J., Eden, D., Dupont, S. M., Talbott, J., Zhuoquiong, R., Liu, Y., Granberg, T., Ouellette, R., Tachibana, Y., Hori, M., Kamiya, K., Chougar, L., Stawiarz, L., Hillert, J., Bannier, É., Kerbrat, A., ... Cohen-Adad, J. (2019). Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks. NeuroImage, 184, 901-915. External link
Combès, B., Kerbrat, A., Ferré, J. C., Callot, V., Maranzano, J., Badji, A., Le Page, E., Labauge, P., Ayrignac, X., Dallière, C. C., de Champfleur, N. M., Pelletier, J., Maarouf, A., de Seze, J., Collongues, N., Brassat, D., Durand-Dubief, F., Barillot, C., Bannier, É., & Edan, G. (2019). Focal and diffuse cervical spinal cord damage in patients with early relapsing-remitting MS: A multicentre magnetisation transfer ratio study. Multiple Sclerosis Journal, 25(8), 1113-1123. External link
Eden, D., Gros, C., Badji, A., Dupont, S. M., De Leener, B., Maranzano, J., Zhuoquiong, R., Liu, Y., Granberg, T., Ouellette, R., Stawiarz, L., Hillert, J., Talbott, J., Bannier, É., Kerbrat, A., Edan, G., Labauge, P., Callot, V., Pelletier, J., ... Cohen-Adad, J. (2019). Spatial distribution of multiple sclerosis lesions in the cervical spinal cord. Brain, 142(3), 633-646. External link
Gros, C., Badji, A., Maranzano, J., Zhuoquiong, R., Yaou, L., Bannier, É., Kerbrat, A., Edan, G., Labauge, P., Callot, V., Pelletier, J., Audoin, B., Rasoanandrianina, H., Valsasina, P., Filippi, M., Bakshi, R., Tauhid, S., Prados, F., Yiannakas, M. C., ... Cohen-Adad, J. (2018, June). Automatic MS lesion segmentation in the spinal cord using deep learning [Poster]. Joint annual meeting ISMRM - ESMRMB, Paris, France. External link
Gros, C., De Leener, B., Dupont, S. M., Martin, A. R., Fehlings, M. G., Bakshi, R., Tummala, S., Auclair, V., McLaren, D. G., Callot, V., Cohen-Adad, J., & Sdika, M. (2018). Automatic spinal cord localization, robust to MRI contrasts using global curve optimization. Medical Image Analysis, 44, 215-227. External link
Alley, S., Gilbert, G., Wheeler-Kingshott, C. A. M. G., Samson, R. S., Grussu, F., Martin, A., Bannier, É., Callot, V., Smith, S. A., Xu, J., Dewey, B., Weber, K. A., Parrish, T., McLauren, D., Barker, G. J., Papinutto, N., Seif, M., Freund, P., Barry, R. L., ... Cohen-Adad, J. (2018, June). Consensus acquisition protocol for quantitative MRI of the cervical spinal cord at 3T [Poster]. Joint annual meeting ISMRM - ESMRMB, Paris, France. External link
De Leener, B., Fonov, V. S., Collins, D. L., Callot, V., Stikov, N., & Cohen-Adad, J. (2018). PAM50: Unbiased multimodal template of the brainstem and spinal cord aligned with the ICBM152 space. NeuroImage, 165, 170-179. External link
Eden, D., Gros, C., Badji, A., Dupont, S., Maranzano, J., Zhuoquiong, R., Liu, Y., Talbott, J., Bannier, É., Kerbrat, A., Edan, G., Labauge, P., Callot, V., Pelletier, J., Audoin, B., Rasoanandrianina, H., Valsasina, P., Filippi, M., Bakshi, R., ... Cohen-Adad, J. (2018, June). Spatial distribution of multiple sclerosis in the cervical cord [Poster]. Joint annual meeting ISMRM - ESMRMB, Paris, France. External link
Dupont, S. M., De Leener, B., Taso, M., Le Troter, A., Nadeau, S., Stikov, N., Callot, V., & Cohen-Adad, J. (2017). Fully-integrated framework for the segmentation and registration of the spinal cord white and gray matter. NeuroImage, 150, 358-372. External link
Gros, C., De Leener, B., Dupont, S. M., Martin, A. R., Fehlings, M. G., Bakshi, R., Tummala, S., Auclair, V., McLaren, D. G., Callot, V., Sdika, M., & Cohen-Adad, J. (2017, September). OptiC: Robust and automatic spinal cord localization on a large variety of MRI data using a distance transform based global optimization [Paper]. 20th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2017), Québec City, QC, Canada. External link
De Leener, B., Fonov, V., Collins, D. L., Callot, V., Stikov, N., & Cohen-Adad, J. (2017, April). PAM50 : multimodal template of the brainstem and spinal cord compatible with the ICBM152 space [Poster]. ISMRM 25th annual meeting & Exhibition, Honolulu, Hawai. External link
De Leener, B., Lévy, S., Dupont, S. M., Fonov, V. S., Stikov, N., Collins, D. L., Callot, V., & Cohen-Adad, J. (2017). SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data. NeuroImage, 145, 24-43. External link
De Leener, B., Taso, M., Fonov, V., Le Troter, A., Stikov, N., Collins, L., Callot, V., & Cohen-Adad, J. (2016, May). Fully-integrated T1, T2, T2*, white and gray matter atlases of the spinal cord [Poster]. 24th Annual Meeting of ISMRM, Singapore. External link
Fradet, L., Arnoux, P.-J., Callot, V., & Petit, Y. (2016). Geometrical variations in white and gray matter affect the biomechanics of spinal cord injuries more than the arachnoid space. Advances in Mechanical Engineering, 8(8), 168781401666470. Available
De Leener, B., Taso, M., Cohen-Adad, J., & Callot, V. (2016). Segmentation of the human spinal cord. Magnetic Resonance Materials in Physics, Biology and Medicine, 29(2), 125-153. External link
Taso, M., Le Troter, A., Sdika, M., Cohen-Adad, J., Arnoux, P.-J., Guye, M., Ranjeva, J.-P., & Callot, V. (2015). A reliable spatially normalized template of the human spinal cord - Applications to automated white matter/gray matter segmentation and tensor-based morphometry (TBM) mapping of gray matter alterations occurring with age. NeuroImage, 117, 20-28. External link
De Leener, B., Roux, A., Touati, J., Levy, S., Taso, M., Fonov, V., Collins, D. L., Callot, V., & Cohen-Adad, J. (2015, May). Template-based analysis of multi-parametric MRI data with the Spinal Cord Toolbox [Paper]. ISMRM 23rd Annual Meeting & Exhibition, Toronto, Ontario, Canada. External link
Benhamou, M., Fonov, V., Taso, M., Le Troter, A., Sdika, M., Collins, L., Callot, V., & Cohen-Adad, J. (2014, May). Atlas of white-matter tracts in the human spinal cord [Paper]. 22nd Annual Meeting of ISMRM, Milan, Italy. External link
Fonov, V., Le Troter, A., Taso, M., Leveque, G., Benhamou, M., Sdika, M., Collins, D. L., Callot, V., & Cohen-Adad, J. (2014, May). MNI-Poly-AMU average anatomical template for automatic spinal cord measurements [Paper]. 22nd Annual Meeting of ISMRM, Milan, Italy. External link
Cohen-Adad, J., De Leener, B., Benhamou, M., Cadotte, D., Fleet, D., Cadotte, A., Fehlings, M. G., Pelletier Paquette, J. F., Thong, W., Taso, M., Collins, D. L., Callot, V., & Fonov, V. (2014, June). Spinal cord toolbox : an open-source framework for processing spinal cord MRI data [Paper]. 20th Annual Meeting of OHBM, Hamburg, Germany. External link
Taso, M., Le Troter, A., Sdika, M., Fonov, V. S., Cohen-Adad, J., Guye, M., Ranjeva, J.-P., & Callot, V. (2014, May). Validation of a 2D spinal cord probabilistic atlas : Application to FA measurement and VBM study of the GM atrophy occurring with age [Paper]. 22nd Annual Meeting of ISMRM, Milan, Italy. External link
