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Laine Medina, N. J., Gros, C., Cohen-Adad, J., Le Troter, A., & Callot, V. (mai 2022). A multiclass deep-learning model with realistic data augmentation for improved 7T gray matter/spinal cord segmentation on patients and controls [Présentation]. Dans Joint annual Meeting ISMRM ESMRMB ISMRT, London, UK. Lien externe
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., de Sousa, P. L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Generic acquisition protocol for quantitative MRI of the spinal cord. Nature Protocols, 16(10), 4611-4632. Disponible
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R., Barth, M., Battiston, M., Büchel, C., Budde, M. D., Callot, V., Combes, A. J.E., De Leener, B., Descoteaux, M., Sousa, P. L. , Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Author Correction: Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers. Scientific Data, 8(1), 251 (2 pages). Disponible
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., de Sousa, P. L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Author Correction: Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers (vol 8, 219, 2021). Scientific Data, 8(1), 242 (1 page). Disponible
Cohen-Adad, J., Alonso Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., de Sousa, P. L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers. Scientific Data, 8(1), 219 (17 pages). Disponible
Lemay, A., Gros, C., Zhuo, Z., Zhang, J., Duan, Y., Cohen-Adad, J., & Liu, Y. (2021). Automatic multiclass intramedullary spinal cord tumor segmentation on MRI with deep learning. NeuroImage - Clinical, 31, 9 pages. Disponible
Lemay, A., Gros, C., Vincent, O., Liu, Y., Cohen, J. P., & Cohen-Adad, J. (juillet 2021). Benefits of linear conditioning for segmentation using metadata [Communication écrite]. 4th Conference on Medical Imaging with Deep Learning (CMDL 2021), Lubeck, Germany. Lien externe
Lemay, A., Gros, C., Vincent, O., Liu, Y., Cohen, J. P., & Cohen-Adad, J. (juillet 2021). Benefits of Linear Conditioning with Metadata for Image Segmentation [Présentation]. Dans 4th Conference on Medical Imaging with Deep Learning (MIDL 2021). Publié dans Proceedings of Machine Learning Research, 143. Lien externe
Gros, C., Lemay, A., Vincent, O., Rouhier, L., Bourget, M.-H., Bucquet, A., Cohen, P., & Cohen-Adad, J. (2021). Ivadomed : a medical imaging deep learning toolbox. Journal of Open Source Software, 6(58), 5 pages. Lien externe
Gros, C., Lemay, A., & Cohen-Adad, J. (2021). SoftSeg: Advantages of soft versus binary training for image segmentation. Medical Image Analysis, 71, 12 pages. Lien externe
Badj, A., de la Colina, A. N., Boshkovski, T., Sabra, D., Karakuzu, A., Robitaille-Grou, M.-C., Gros, C., Joubert, S., Bherer, L., Lamarre-Cliche, M., Stikov, N., Gauthier, C. J., Cohen-Adad, J., & Girouard, H. (2020). A Cross-Sectional Study on the Impact of Arterial Stiffness on the Corpus Callosum, a Key White Matter Tract Implicated in Alzheimer's Disease. Journal of Alzheimers Disease, 77(2), 591-605. Lien externe
Gros, C., Asiri, A., De Leener, B., Watson, C., Cowin, G., Ruitenberg, M., Kurniawan, N., & Cohen-Adad, J. (août 2020). Ex vivo MRI template of the human cervical cord at 80μm isotropic resolution [Présentation]. Dans 2020 Joint annual meeting ISMRM & ISMRT. Non disponible
Kerbrat, A., Gros, C., Badji, A., Bannier, É., Galassi, F., Combes, B., Chouteau, R., Labauge, P., Ayrignac, X., Carra-Dalliere, C., Maranzano, J., Granberg, T., Ouellette, R., Stawiarz, L., Hillert, J., Talbott, J., Tachibana, Y., Hori, M., Kamiya, K., ... Cohen-Adad, J. (2020). Multiple sclerosis lesions in motor tracts from brain to cervical cord: spatial distribution and correlation with disability. Brain, 143(7), 2089-2105. Lien externe
Alonso Ortiz, E., Gros, C., Foias, A., Abramovic, M., Ameitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Buchel, C., Budde, M., Callot, V., De Leener, B., Descoteaux, M., De Sousa, P. L., Dostal, M., Doyon, J., Dvorak, A., ... Cohen-Adad, J. (août 2020). Quantitative MRI of the spinal cord : reproducibility and normative values across 40 sites [Communication écrite]. ISMRM & SMRT annual Meeting & Exhibition (ISMRM 2020). Lien externe
Gros, C., De Leener, B., Badji, A., Maranzano, J., Eden, D., Dupont, S. M., Talbott, J., Zhuoquiong, R., Liu, Y., Granberg, T., Ouellette, R., Tachibana, Y., Hori, M., Kamiya, K., Chougar, L., Stawiarz, L., Hillert, J., Bannier, É., Kerbrat, A., ... Cohen-Adad, J. (2019). Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks. NeuroImage, 184, 901-915. Lien externe
Paugam, F., Lefeuvre, J., Perone, C. S., Gros, C., Reich, D. S., Sati, P., & Cohen-Adad, J. (2019). Open-source pipeline for multi-class segmentation of the spinal cord with deep learning. Magnetic Resonance Imaging, 64, 21-27. Lien externe
Kerbrat, A., Gros, C., Badji, A., Bannier, É., Galassi, F., Combes, B., Labauge, P., Ayrignac, X., Dallière, C. C., Pinna, F., De Leener, B., Eden, D., Maranzano, J., Zhuoquiong, R., Granbert, T., Stawiarz, L., Hillert, J., Ouellette, R., Talbott, J. F., ... Cohen-Adad, J. (mai 2019). Spatial distribution of multiple sclerosis lesions along the brain and spinal motor tracts and correlation with functional deficits [Communication écrite]. ISMRM 27th Annual Meeting & Exhibition, Montréal, QC, Canada. Lien externe
Eden, D., Gros, C., Badji, A., Dupont, S. M., De Leener, B., Maranzano, J., Zhuoquiong, R., Liu, Y., Granberg, T., Ouellette, R., Stawiarz, L., Hillert, J., Talbott, J., Bannier, É., Kerbrat, A., Edan, G., Labauge, P., Callot, V., Pelletier, J., ... Cohen-Adad, J. (2019). Spatial distribution of multiple sclerosis lesions in the cervical spinal cord. Brain, 142(3), 633-646. Lien externe
Gros, C. (2018). Automatic Segmentation of Intramedullary Multiple Sclerosis Lesions [Mémoire de maîtrise, École Polytechnique de Montréal]. Disponible
Gros, C., Badji, A., Maranzano, J., Zhuoquiong, R., Yaou, L., Bannier, É., Kerbrat, A., Edan, G., Labauge, P., Callot, V., Pelletier, J., Audoin, B., Rasoanandrianina, H., Valsasina, P., Filippi, M., Bakshi, R., Tauhid, S., Prados, F., Yiannakas, M. C., ... Cohen-Adad, J. (juin 2018). Automatic MS lesion segmentation in the spinal cord using deep learning [Affiche]. Joint annual meeting ISMRM - ESMRMB, Paris, France. Lien externe
Gros, C., De Leener, B., Dupont, S. M., Martin, A. R., Fehlings, M. G., Bakshi, R., Tummala, S., Auclair, V., McLaren, D. G., Callot, V., Cohen-Adad, J., & Sdika, M. (2018). Automatic spinal cord localization, robust to MRI contrasts using global curve optimization. Medical Image Analysis, 44, 215-227. Lien externe
Eden, D., Gros, C., Badji, A., Dupont, S., Maranzano, J., Zhuoquiong, R., Liu, Y., Talbott, J., Bannier, É., Kerbrat, A., Edan, G., Labauge, P., Callot, V., Pelletier, J., Audoin, B., Rasoanandrianina, H., Valsasina, P., Filippi, M., Bakshi, R., ... Cohen-Adad, J. (juin 2018). Spatial distribution of multiple sclerosis in the cervical cord [Affiche]. Joint annual meeting ISMRM - ESMRMB, Paris, France. Lien externe
Paquin, M.-Ê., El Mendili, M. M., Gros, C., Dupont, S. M., Cohen-Adad, J., & Pradat, P. F. (2018). Spinal Cord Gray Matter Atrophy in Amyotrophic Lateral Sclerosis. American Journal of Neuroradiology, 39(1), 184-192. Lien externe
Gros, C., De Leener, B., Dupont, S. M., Martin, A. R., Fehlings, M. G., Bakshi, R., Tummala, S., Auclair, V., McLaren, D. G., Callot, V., Sdika, M., & Cohen-Adad, J. (septembre 2017). OptiC: Robust and automatic spinal cord localization on a large variety of MRI data using a distance transform based global optimization [Communication écrite]. 20th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2017), Québec City, QC, Canada. Lien externe
