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Afkham, B. V., & Alonso Ortiz, E. (2024). On the impact of B0 shimming algorithms on single‐voxel MR spectroscopy. Magnetic Resonance in Medicine, 30257 (9 pages). Available
Aigner, C. S., Alarcon, M. S., D’Astous, A., Alonso Ortiz, E., Cohen-Adad, J., & Schmitter, S. (2024, May). Calibration-Free pTx of the Cervical, Thoracic, and Lumbar Spinal Cord at 7T [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Aigner, C. S., D'Astous, A., Dietrich, S., Lutz, M., Alonso Ortiz, E., Cohen-Adad, J., & Schmitter, S. (2024, May). Investigating Respiration Induced B0 Field Variations in the Thoracic and Lumbar Spinal Cord at 7T [Presentation]. In ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Aigner, C. S., Sánchez Alarcon, M. F., D'Astous, A., Alonso Ortiz, E., Cohen-Adad, J., & Schmitter, S. (2024). Calibration-free parallel transmission of the cervical, thoracic, and lumbar spinal cord at 7T. Magnetic Resonance in Medicine, 30137 (15 pages). External link
Al-Shawwa, A., Ost, K., Anderson, D., Cho, N., Evaniew, N., Jacobs, W. B., Martin, A. R., Gaekwad, R., Tripathy, S., Bouchard, J., Casha, S., Cho, R., duPlessis, S., Lewkonia, P., Nicholls, F., Salo, P. T., Soroceanu, A., Swamy, G., Thomas, K. C., ... Cadotte, D. W. (2024). Advanced MRI metrics improve the prediction of baseline disease severity for individuals with degenerative cervical myelopathy. The Spine Journal, 10 pages. External link
Bédard, S., El Baz, A., Macar, U., & Cohen-Adad, J. (2023, June). Contrast-agnostic segmentation of the spinal cord using deep learning [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Benveniste, P.-L., Valošek, J., Chen, M., Molinier, N., Lee, L. E., Prat, A., Vavasour, Z., Tam, R., Traboulsee, A., Kolind, S., Oh, J., & Cohen-Adad, J. (2024, May). Automatic segmentation of spinal cord multiple sclerosis lesions across multiple sites, contrasts and vendors [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Boudreau, M., Karakuzu, A., Boré, A., Pinsard, B., Zelenkovski, K., Alonso Ortiz, E., Boyle, J., Bellec, L., & Cohen-Adad, J. (2024). Longitudinal reproducibility of brain and spinal cord quantitative MRI biomarkers. Imaging Neuroscience. External link
Boudreau, M., Karakuzu, A., Boré, A., Zelenkovski, K., Pinsard, B., Alonso Ortiz, E., Boyle, J., Bellec, P., & Cohen-Adad, J. (2023, June). Longitudinal stability of brain and spinal cord structural quantitative MRI measures [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Boudreau, M., Karakuzu, A., Cohen-Adad, J., Bozkurt, E., Carr, M., Castellaro, M., Concha, L., Doneva, M., Dual, S. A., Ensworth, A., Foias, A., Fortier, V., Gabr, R. E., Gilbert, G., Glide-Hurst, C. K., Grech-Sollars, M., Hu, S., Jalnefjord, O., Jovicich, J., ... ISMRM Quantitative MR Study Group, T. (2024). Repeat it without me: Crowdsourcing the T1 mapping common ground via the ISMRM reproducibility challenge. Magnetic Resonance in Medicine, 30111 (13 pages). External link
Boudreau, M., Karakuzu, A., Cohen-Adad, J., Bozkurt, E., Carr, M., Castellaro, M., Concha, L., Doneva, M., Dual, S. A., Ensworth, A., Foias, A., Fortier, V., Gabr, R. E., Gilbert, G., Glide-Hurst, C. K., Grech-Sollars, M., Hu, S., Jalnefjord, O., Jovicich, J., ... Stikov, N. (2024). Paper is not enough: Crowdsourcing the T₁ mapping common ground via the ISMRM reproducibility challenge [Dataset]. External link
Boudreau, M., Karakuzu, A., Cohen-Adad, J., Carr, M., Doneva, M., Dual, S. A., Ennis, D. B., Ensworth, A., Foias, A., Fortier, V., Gilbert, G., Grech‐Sollars, M., Holloway, L., Hu, S., Jalnefjord, O., Koken, P., Kolokotronis, A., Kukran, S., Lee, N. H., ... Stikov, N. (2023, June). Phantom Results of the ISMRM Joint RRSG–qMRSG Reproducibility Challenge on T1 mapping [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Bréhéret, A., D'Astous, A., Lopez Rios, N., Alonso Ortiz, E., Stockmann, J., & Cohen-Adad, J. (2024, May). Dynamic shimming of the spinal cord using a 15-channel AC/DC coil [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Combes, B. F., Kalva, S. K., Benveniste, P.-L., Tournant, A., Law, M. H., Newton, J., Krüger, M., Weber, R. Z., Dias, I., Noain, D., Dean-Ben, X. L., Konietzko, U., Baumann, C. R., Gillberg, P.-G., Hock, C., Nitsch, R. M., Cohen-Adad, J., Razansky, D., & Ni, R. (2024). Spiral volumetric optoacoustic tomography of reduced oxygen saturation in the spinal cord of M83 mouse model of Parkinson's disease. European Journal of Nuclear Medicine and Molecular Imaging, 17 pages. External link
D'Astous, A., Kaptan, M., Papp, D. S., Dabbagh, A., Finsterbusch, J., Eippert, F., Alonso Ortiz, E., & Cohen-Adad, J. (2023, June). Slice-wise z-shimming for spinal cord fMRI with Shimming Toolbox [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Dimitrijevic, A., Dégeilh, F., & De Leener, B. (2024, May). Can We Distinguish Intra- and Inter-Variability with Log Jacobian Maps Derived from Brain Morphological Deformations Using Pediatric MRI Scans? [Paper]. ISMRM 23rd Annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Dimitrijevic, A., Noblet, V., & De Leener, B. (2024). Impact of Initialization on Intra-subject Pediatric Brain MR Image Registration: A Comparative Analysis between SyN ANTs and Deep Learning-Based Approaches. The Journal of Machine Learning for Biomedical Imaging, 2(Special), 916-954. External link
Freund, P., Boller, V., Emmenegger, T. M., Akbar, M., Hupp, M., Pfender, N., Wheeler-Kingshott, C. A. M. G., Cohen-Adad, J., Fehlings, M. G., Curt, A., & Seif, M. (2024). Quantifying neurodegeneration of the cervical cord and brain in degenerative cervical myelopathy: A multicentre study using quantitative magnetic resonance imaging. European Journal of Neurology, e16297 (12 pages). External link
Hatipoğlu, O. N., Charidimos, T., Ocampo‐Pineda, M., Melie‐García, L., Weigel, M., Lu, P.‐J., Baraković, M., Cohen-Adad, J., Kappos, L., Kühle, J., & Granziera, C. (2023, June). Quantifying Cervical Spinal Cord Pathology of Multiple Sclerosis Patients Using Advanced MRI [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Hok, P., Valošek, J., Svrcinova, T., Odstrcil, F., Rybáriková, M., Král, M., Nijhar, K., Arkhipova, A., Jasenská, M., Mares, J., & Sín, M. Diffusion-weighted imaging and retinal imaging predictors of functional outcome after the first episode of optic neuritis [Paper]. 40th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIM), Copenhagen, Denmark, September 18-20, 2024. Published in Multiple Sclerosis Journal, 30(3). External link
Horák, T., Horáková, M., Keřkovský, M., Dostál, M., Hluštı́k, P., Valošek, J., Svátková, A., Bednařík, P., Vlčková, E., & Bednařík, J. (2024). Evidence-based commentary on the diagnosis, management, and further research of degenerative cervical spinal cord compression in the absence of clinical symptoms of myelopathy. Frontiers in Neurology, 15, 9 pages. Available
Hori, M., Hagiwara, A., Kamiya, K., Yokoyama, K., Fukunaga, I., Sano, K., Kamagata, K., Murata, K., Fujita, S., Andica, C., Wada, A., Cohen-Adad, J., & Aoki, S. (2024, May). Exploring the Efficacy of Different Combinations of B-Values and B-Tensor Shapes in Assessing Spinal Cord in MS and NMOSD Using Micro-FA [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Hori, M., Hagiwara, A., Yokoyama, K., Fukunaga, I., Sano, K., Kamagata, K., Murata, K., Fujita, S., Andica, C., Wada, A., Kamiya, K., Cohen-Adad, J., & Aoki, S. (2023, June). Anisotropic and Isotropic Kurtosis Estimation of Spinal Cord Microstructure in Multiple Sclerosis and Neuromyelitis Optica Spectrum Disorder [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Karakuzu, A., Boudreau, M., & Stikov, N. (2024). Reproducible Research Practices in Magnetic Resonance Neuroimaging: A Review Informed by Advanced Language Models. Magnetic Resonance in Medical Sciences, 0174 (16 pages). External link
Karakuzu, A., DuPré, E., Bermudez, P., Boudreau, M., Harding, R., Poline, J.‐B., Das, S., Bellec, P., & Stikov, N. (2024, May). NeuroLibre: Living MRI preprints with built-in support for code review [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Karakuzu, A., Samson, P., & Stikov, N. (2023, June). Vendor-neutrality and upgrade immunity: Post-upgrade assessment of vendor-neutral qMRI from two perspectives [Paper]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Karthik, E. N., Valošek, J., Smith, A. C., Pfyffer, D., Schading, S., Farner, L., Weber, K. A., Freund, P., & Cohen-Adad, J. (2024). SCIseg: Automatic Segmentation of Intramedullary Lesions in Spinal Cord Injury on T2-weighted MRI Scans. Radiology Artificial Intelligence. External link
Labounek, R., Bondy, M. T., Paulson, A. L., Bédard, S., Abramovic, M., Alonso-Ortiz, E., Atcheson, N. T., Barlow, L. R., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M. D., Callot, V., Combes, A., Leener, B. D., Descoteaux, M., Loureiro de Sousa, P., Dostál, M., ... Nestrašil, I. (2024). Body size interacts with the structure of the central nervous system: A multi-center in vivo neuroimaging study. bioRxiv, 32 pages. External link
Laines Medina, N. J., Le Troter, A., Mchinda, S., Cohen-Adad, J., & Callot, V. (2024, May). Right-left asymmetry in the cervical spinal cord using T1 mapping at 7T [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Lazari, A., Tachrount, M., Valverde, J. M., Papp, D. S., Beauchamp, A., McCarthy, P., Ellegood, J., Grandjean, J., Johansen‐Berg, H., Zerbi, V., Lerch, J. P., & Mars, R. B. (2024). The mouse motor system contains multiple premotor areas and partially follows human organizational principles. Cell Report, 43(5), 11491 (19 pages). Available
Malik, S., Shimron, E., Schauman, S., Nayak, K., Kumar, P., Caligiuri, M. E., Santini, F., Stikov, N., Bell, L., Montalba, C., & Jezzard, P. (2024). Code review facility in Magnetic Resonance in Medicine. Magnetic Resonance in Medicine. External link
Masjoodi, S., Farrokhi, M. R., Afkham, B. V., & Koohsar, J. S. (2024). Advances in DTI studies for diagnoses and treatment of obsessive-compulsive disorder. Psychiatry Research Neuroimaging, 340, 111794-111794. External link
Muhammad, F., Weber II, K. A., Bédard, S., Haynes, G., Smith, L., Khan, A. F., Hameed, S., Gray, K., McGovern, K., Rohan, M., Ding, L., Van Hal, M., Dickson, D., Tamimi, M. A., Parrish, T., Dhaher, Y., & Smith, Z. A. (2024). Cervical spinal cord morphometrics in degenerative cervical myelopathy: quantification using semi-automated normalized technique and correlation with neurological dysfunctions. The Spine Journal, 26 pages. External link
Papp, D. S., Boulant, N., Massire, A., Mauconduit, F., Gras, V., & Cohen-Adad, J. (2023, June). Universal pulses for the cervical spinal cord at 7T: a feasibility study [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Papp, D. S., Cereza, G., D'Astous, A., Alonso Ortiz, E., & Cohen-Adad, J. (2023, June). RF shimming in the spinal cord at 7T [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Papp, D., Gilbert, K. M., Cereza, G., D'Astous, A., Lopez-Rios, N., Boudreau, M., Couch, M. J., Yazdanbakhsh, P., Barry, R. L., Alonso Ortiz, E., & Cohen-Adad, J. (2024). RF shimming in the cervical spinal cord at 7T. Magnetic Resonance in Medicine, 30225 (12 pages). Available
Poldrack, R. A., Markiewicz, C. J., Appelhoff, S., Ashar, Y. K., Auer, T., Baillet, S., Bansal, S., Beltrachini, L., Benar, C. G., Bertazzoli, G., Bhogawar, S., Blair, R. W., Bortoletto, M., Boudreau, M., Brooks, T. L., Calhoun, V. D., Castelli, F. M., Clement, P., Cohen, A. L., ... Gorgolewski, K. J. (2024). The past, present, and future of the brain imaging data structure (BIDS). Imaging Neuroscience, 2, 00103 (19 pages). External link
Ridani, D., De Leener, B., & Alonso Ortiz, E. (2024, May). A realistic in-silico brain phantom for magnetic susceptibility-separation algorithm validation [Paper]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Schilling, K. G., Combes, A. J. E., Ramadass, K., Rheault, F., Sweeney, G., Prock, L., Sriram, S., Cohen-Adad, J., Gore, J. C., Landman, B. A., Smith, S. A., & O'Grady, K. P. (2024). Influence of preprocessing, distortion correction and cardiac triggering on the quality of diffusion MR images of spinal cord. Magnetic Resonance Imaging, 108, 11-21. External link
Shahrampour, S., Alizadeh, M., Middleton, D. M., De Leener, B., Krisa, L., Flanders, A. E., Faro, S. H., Cohen-Adad, J., Mulcahey, M.J., & Mohamed, F. B. (2023, June). Quantitative Magnetic Resonance Imaging to Quantify the Macro and Microstructural Changes in Normal and Pediatrics with Spinal Cord Injury [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
St-Onge, S., Coustaury, C. M. S., Landelle, C., Dahlberg, L. L., Lungu, O., Doyon, J., & De Leener, B. (2024, May). Parkinson's disease in the spinal cord: an exploratory study to establish T2*w, MTR and diffusion-weighted imaging metric values [Paper]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Valošek, J., & Cohen-Adad, J. (2024). Reproducible Spinal Cord Quantitative MRI Analysis with the Spinal Cord Toolbox. Magnetic Resonance in Medical Sciences, rev.2023-0 (9 pages). External link
Valošek, J., Bédard, S., Keřkovský, M., Rohan, T., & Cohen-Adad, J. (2024). A database of the healthy human spinal cord morphometry in the PAM50 template space. Imaging Neuroscience, 2, 15 pages. Available
Valošek, J., Bédard, S., Keřkovský, M., Rohan, T., & Cohen-Adad, J. (2024, May). Interactive database of spinal cord morphometry [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Valošek, J., Karthik, E. N., Bouthillier, M., Schading, S., Farner, L., Pfyffer, D., Smith, A. C., Weber, K. A., Freund, P., & Cohen-Adad, J. (2024, May). Automatic segmentation of T2-weighted hyperintense lesions in spinal cord injury [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Valošek, J., Mathieu, T., Schlienger, R., Kowalczyk, O. S., & Cohen-Adad, J. (2024, May). Automatic segmentation of spinal cord nerve rootlets [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Valošek, J., Mathieu, T., Schlienger, R., Kowalczyk, O. S., & Cohen-Adad, J. (2024). Automatic segmentation of the spinal cord nerve rootlets. Imaging Neuroscience, 2. External link
Warszawer, Y., Molinier, N., Valošek, J., Shirbint, E., Benveniste, P.-L., Achiron, A., Eshaghi, A., & Cohen-Adad, J. (2024, May). Fully Automatic Vertebrae and Spinal Cord Segmentation Using a Hybrid Approach Combining nnU-Net and Iterative Algorithm [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Zhang, E., Londoño, I., Fouquet, J. P., Pshezhetsky, A. V., De Leener, B., & Lodygensky, G. A. (2023, June). Diffusion Bubble Model: A Novel Method For Detecting Neuroinflammation in Mouse Brain With Sanfilippo Syndrome [Paper]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link