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Krejčí, K., Chmelík, J., Bédard, S., Eippert, F., Horn, U., Callot, V., Cohen-Adad, J., & Valošek, J. (2026). Segmentation of spinal rootlets across MRI contrasts with RootletSeg. Scientific Reports. External link
Smith, Z. A., Haynes, G., Bédard, S., Hameed, S., Khan, A. F., Dastgir, A., Baha, A., Kumar, U., Van Hal, M., Al Tamimi, M., Hu, S. S., Dhaher, Y., Shakir, H. J., Ratliff, J., Weber, K. A., & Fauziyya, M. (2026). Multisite Spinal Cord and Canal Morphometry Reveals Age-Linked and Sex-Linked Structural Vulnerability in Degenerative Cervical Myelopathy Outcomes. Neurosurgery. External link
Salmona, A., Bédard, S., Valošek, J., Ost, K., Bouthillier, M., Dávid, G., Seif, M., Curt, A., Pfender, N., Hupp, M., Freund, P., Horák, T., Kudlička, P., Bednařík, J., Muhammad, F., Smith, Z. A., & Cohen-Adad, J. (2026). Automated robust segmentation of the spinal canal on MRI. European Journal of Radiology Artificial Intelligence, 6, 100075-100075. External link
Enamundram, M. V. N. K., Bédard, S., Valošek, J., Aigner, C. S., Bannier, E., Bednařík, J., Callot, V., Combes, A., Curt, A., David, G., Eippert, F., Farner, L., G. Fehlings, M., Freund, P., Granberg, T., Granziera, C., Horn, U., Horák, T., Humphreys, S., ... Cohen-Adad, J. (2026). Monitoring morphometric drift in lifelong learning segmentation of the spinal cord. Imaging Neuroscience, 40 pages. External link
Fundaun, J., Oliva, V., Bédard, S., Wesselink, E. O., Lynn, B. P., Pai\xa0S., A., Pfyffer, D., Kaptan, M., Berhe, N., Ratliff, J., Hu, S. S., Smith, Z. A., Hastie, T. J., Mackey, S., McKay, M. J., Elliott, J. M., Delp, S. L., Chaudhari, A. S., Law, C. S. W., ... Weber, K. A. (2025). Automated Segmentation of Forearm Muscles: Clinical Associations With Hand Function, Muscle Volume and Intramuscular Fat. JCSM Communications, 8(2), e70015 (10 pages). External link
Bédard, S., Enamundram, M. V. N. K., Valošek, J., & Cohen-Adad, J. (2025, May). Minimum sample size to detect spinal cord atrophy with automatic soft segmentation [Paper]. ISMRM & ISMRT Annual Meeting (ISMRM-ISMRT 2025), Honolulu, Hawaii, USA (1 page). Published in Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Onno Wesselink, E., Elliott, J. M., McKay, M. J., De Martino, E., Caplan, N., Mackey, S., Cohen-Adad, J., Bédard, S., De Leener, B., Enamundram, M. V. N. K., Law, C., Fortin, M., Vleggeert-Lankamp, C., Di Ieva, A., Kim, B., Hancock, M. J., Pool-Goudzwaard, A., Pevenage, P., & Weber I. I., K. A. (2025, May). Segment-Any-Muscle: Towards an Open-Source, Contrast-Agnostic Computer-Vision Muscle Segmentation Model for MRI and CT [Paper]. ISMRM & ISMRT Annual Meeting (ISMRM-ISMRT 2025), Honolulu, Hawaii, USA. Published in Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Muhammad, F., Weber, K. A., Bédard, S., Haynes, G., & Smith, Z. A. (2025). Semiautomated Pipeline Effectively Assesses Severity and Monitor Disease Progression in Compressed Spinal Cord of Degenerative Cervical Myelopathy Patients. Neurosurgery Open, 6(2), e00138 (11 pages). Available
Labounek, R., Bondy, M. T., Paulson, A., Bédard, S., Abramovic, M., Alonso-Ortiz, E., Atcheson, N., Barlow, L., Barry, R., Barth, M., Battiston, M., Büchel, C., Budde, M. D., Callot, V., Combes, A., De Leener, B., Descoteaux, M., Sousa, P. L. , Dostál, M., ... Nestrašil, I. (2025). Body size and intracranial volume interact with the structure of the central nervous system: A multi-center in vivo neuroimaging study. Imaging Neuroscience, 3, 31 pages. Available
Cohen-Adad, J., Guenther, N., Foias, A., Valošek, J., Guay-Paquet, M., Bédard, S., Bautin, P., Labounek, R., Newton, J., Molinier, N., Halchenko, Y., & Gros, C. (2025). spine-generic/data-multi-subject: r20250314 [Dataset]. External link
Bédard, S., Valošek, J., Seif, M., Curt, A., Schading-Sassenhausen, S., Pfender, N., Freund, P., Hupp, M., & Cohen-Adad, J. (2025). Normalizing spinal cord compression measures in degenerative cervical myelopathy. The Spine Journal, 25(9), 1951-1963. Available
Bédard, S., Enamundram, M. V. N. K., Tsagkas, C., Pravatà, E., Granziera, C., Smith, A. C., Weber, K. A., & Cohen-Adad, J. (2025). Towards contrast-agnostic soft segmentation of the spinal cord. Medical Image Analysis, 101, 103473-103473. External link
Nobre Leal de Souza Oliva, V., Bédard, S., Kaptan, M., Pfyffer, D., Chy, B., Aufrichtig, S., Berhe, N., Chaudhari, A., Tharin, S., Hu, S. S., Ratliff, J. K., Smith, Z. A., Smith, A., Glover, G. H., Mackey, S., Law, C. S., & Weber, K. A. (2025). Mapping Hand Function with Simultaneous Brain-Spinal Cord Functional MRI. Imaging Neuroscience, 39 pages. External link
Bédard, S., Valošek, J., Nobre Leal de Souza Oliva, V., Weber, K. A., & Cohen-Adad, J. (2025). Rootlets-based registration to the spinal cord PAM50 template. Imaging Neuroscience, 21 pages. External link
Fundaun, J., Oliva, V., Bédard, S., Wesselink, E., Lynn, B., Pai S., A., Pfyffer, D., Kaptan, M., Berhe, N., Ratliff, J. K., Hu, S. S., Smith, Z. A., Hastie, T. J., Mackey, S., McKay, M., Elliott, J. M., Delp, S. L., Glover, G. H., Chaudhari, A. S., ... Weber I. I., K. A. (2025, May). Automated MRI-Based Quantification of Forearm Muscle Health and Associations with Hand Function [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Honolulu, HI, USA. External link
Bédard, S., Valošek, J., Weber I. I., K. A., & Cohen-Adad, J. (2025, May). Rootlets-informed registration to a spinal cord template: proof-of-concept [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Honolulu, HI, USA. External link
Bédard, S., Enamundram, M. V. N. K., Kaptan, M., Eippert, F., Kinany, N., Ricchi, I., Van De Ville, D., Freund, P., Hupp, M., Lee, L., Traboulsee, A., Tam, R., Prat, A., Vavasour, Z., Kolind, S., Oh, J., Stefan Aigner, C., & Cohen-Adad, J. (2024, May). Automatic spinal cord segmentation: Generalization across MR parameters, sites, vendors and pathologies [Abstract]. ISMRM & ISMRT Annual Meeting (ISMRM-ISMRT 2024), Toronto, ON, Canada (1 page). External link
Valošek, J., Bédard, S., Keřkovský, M., Rohan, T., & Cohen-Adad, J. (2024, May). Interactive database of spinal cord morphometry [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Singapore. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Bédard, S., El Baz, A., Macar, U., & Cohen-Adad, J. (2023, June). Contrast-agnostic segmentation of the spinal cord using deep learning [Abstract]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. Published in Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition. External link
Muhammad, F., Weber I. I, K. A., Bédard, S., Haynes, G., Smith, L., Khan, A. F., Hameed, S., Gray, K., McGovern, K., Rohan, M., Ding, L., Van Hal, M., Dickson, D., Tamimi, M. A., Parrish, T., Dhaher, Y., & Smith, Z. A. (2024). Cervical spinal cord morphometrics in degenerative cervical myelopathy: quantification using semi-automated normalized technique and correlation with neurological dysfunctions. The Spine Journal, 26 pages. External link
Bédard, S. (2024). Exploring the Impact of Anatomical References for Quantifying Spinal Cord Morphometrics Using Magnetic Resonance Imaging [Master's thesis, Polytechnique Montréal]. Available
Valošek, J., Bédard, S., Keřkovský, M., Rohan, T., & Cohen-Adad, J. (2024). A database of the healthy human spinal cord morphometry in the PAM50 template space. Imaging Neuroscience, 2, 15 pages. Available
Bédard, S., Enamundram, N. K., Kaptan, M., Eippert, F., Kinany, N., Ricchi, I., Van De Ville, D., Freund, P., Hupp, M., Lee, L. E., Traboulsee, A., Kolind, S., Oh, J., Aigner, C. S., & Cohen-Adad, J. (2024, May). Automatic spinall cord segmentation : generalization across MR parameters, sites, vendors and pathologies (affiche) [Abstract]. ISMRM & ISMRT annual meeting & exhibition, Singapore. External link
Labounek, R., Bondy, M. T., Paulson, A. L., Bédard, S., Abramovic, M., Alonso Ortiz, E., Atcheson, N. T., Barlow, L. R., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M. D., Callot, V., Combes, A., De Leener, B., Descoteaux, M., Loureiro de Sousa, P., Dostál, M., ... Nestrašil, I. (2024). Body size interacts with the structure of the central nervous system: A multi-center in vivo neuroimaging study. bioRxiv, 32 pages. Available
Valošek, J., Bédard, S., Keřkovský, M., Rohan, T., & Cohen-Adad, J. (2023). A database of the healthy human spinal cord morphometry in the PAM50 template space [Dataset]. External link
Bédard, S., El Baz, A., Macar, U., Bouchard, L.-F., & Cohen-Adad, J. (2023, July). Contrast-agnostic segmentation of the spinal cord : validation in a multi-center cohort [Poster]. OHBM 2023, Montreal, Qc, Canada. External link
Bédard, S., El Baz, A., Macar, U., & Cohen-Adad, J. (2023, June). Contrast-agnostic segmentation of the spinal cord using deep learning [Presentation]. In ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. External link
Blostein, N., Banerjee, R., Bédard, S., Shahrampour, S., De Leener, B., Mohamed, F. B., Middleton, D., Krisa, L., & Cohen-Adad, J. (2023, May). Multimodal pediatric spinal cord template [Paper]. QBIN Scientific Day 2023, Laval, Qc, Canada. External link
Bédard, S., Bouthillier, M., & Cohen-Adad, J. (2023). Pontomedullary junction as a reference for spinal cord cross-sectional area: validation across neck positions. Scientific Reports, 13(1), 10 pages. Available
McGinnis, J., Enamundram, M. V. N. K., Rühling, S., Wurm, R., Stern, K., Bédard, S., Wiltgen, T., Berthele, A., Zimmer, C., Hemmer, B., Benedikt, W., Rückert, D., Kirschke, J., Cohen-Adad, J., & Mühlau, M. (2023, October). Towards generalizable spinal cord lesion segmentation in multiple sclerosis [Poster]. 9th Joint ECTRIMS-ACTRIMS meeting (MSMilan 2023), Milan, Italy (1 page). Published in Multiple Sclerosis Journal, 29(3S). External link
Bédard, S., & Cohen-Adad, J. (2022). Automatic measure and normalization of spinal cord cross-sectional area using the pontomedullary junction. Frontiers in Neuroimaging, 1, 1031253 (15 pages). Available
