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De Leener, B., Lévy, S., Dupont, S. M., Fonov, V. S., Stikov, N., Collins, D. L., Callot, V., & Cohen-Adad, J. (2017). SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data. NeuroImage, 145, 24-43. External link
De Leener, B., Mangeat, G., Dupont, S., Martin, A. R., Callot, V., Stikov, N., Fehlings, M. G., & Cohen-Adad, J. (2017). Topologically Preserving Straightening of Spinal Cord MRI. Journal of Magnetic Resonance Imaging, 46(4), 1209-1219. External link
Dupont, S. M., De Leener, B., Taso, M., Le Troter, A., Nadeau, S., Stikov, N., Callot, V., & Cohen-Adad, J. (2017). Fully-integrated framework for the segmentation and registration of the spinal cord white and gray matter. NeuroImage, 150, 358-372. External link
Duval, T., Lévy, S., Stikov, N., Campbell, J., Mezer, A., Witzel, T., Keil, B., Smith, V., Wald, L. L., Klawiter, E., & Cohen-Adad, J. (2017). g-Ratio weighted imaging of the human spinal cord in vivo. NeuroImage, 145(A), 11-23. External link
Granberg, T., Fan, Q., Treaba, C. A., Ouellette, R., Herranz, E., Mangeat, G., Louapre, C., Cohen-Adad, J., Klawiter, E. C., Sloane, J. A., & Mainero, C. (2017). In vivo characterization of cortical and white matter neuroaxonal pathology in early multiple sclerosis. Brain, 140(11), 2912-2926. External link
Mingasson, T., Duval, T., Stikov, N., & Cohen-Adad, J. (2017). AxonPacking: an open-source software to simulate arrangements of axons in white matter. Frontiers in Neuroinformatics, 11, 1-12. Available
Ouellette, R., Granberg, T., Treaba, C. A., Herranz, E., De Leener, B., Sloane, J. A., Tauhid, S., Yousuf, F., Dupont, S. M., Klawiter, E. C., Bakshi, R., Cohen-Adad, J., & Mainero, C. (2017). In vivo characterization of grey and white matter spinal cord pathology in multiple sclerosis using ultra high field MRI (P4.365). Neurology, 88(16_supplem). External link
Prados, F., Ashburner, J., Blaiotta, C., Brosch, T., Carballido-Gamio, J., Cardoso, M. J., Conrad, B. N., Datta, E., Dávid, G., De Leener, B., Dupont, S. M., Freund, P., Wheeler-Kingshott, C. A. M. G., Grussu, F., Henry, R., Landman, B. A., Ljungberg, E., Lyttle, B., Ourselin, S., ... Cohen-Adad, J. (2017). Spinal cord grey matter segmentation challenge. NeuroImage, 152, 312-329. Available
Saliani, A., Perraud, B., Duval, T., Stikov, N., Rossignol, S., & Cohen-Adad, J. (2017). Axon and myelin morphology in animal and human spinal cord. Frontiers in Neuroanatomy, 11. Available
Badji, A., Mangeat, G., Ouellette, R., Treaba, C. A., Granberg, T., Herranz, E., Louapre, C., Stikov, N., Sloane, J., Bellec, P., Mainero, C., & Cohen-Adad, J. (2017, April). Changes in structural network connectivity in early-stage multiple sclerosis are associated with cortical demyelination [Paper]. ISMRM 25th annual meeting & Exhibition, Honolulu, Hawai. External link
Gros, C., De Leener, B., Dupont, S. M., Martin, A. R., Fehlings, M. G., Bakshi, R., Tummala, S., Auclair, V., McLaren, D. G., Callot, V., Sdika, M., & Cohen-Adad, J. (2017, September). OptiC: Robust and automatic spinal cord localization on a large variety of MRI data using a distance transform based global optimization [Paper]. 20th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2017), Québec City, QC, Canada. External link
Porisky, A., Brosch, T., Ljungberg, E., Tang, L. Y. W., Yoo, Y., De Leener, B., Traboulsee, A., Cohen-Adad, J., & Tam, R. (2017, September). Grey matter segmentation in spinal cord mris via 3D convolutional encoder networks with shortcut connections [Paper]. 3rd International Workshop on Deep Learning in Medical Image Analysis (DLMIA 2017) and 7th International Workshop on Multimodal Learning for Clinical Decision Support (ML-CDS 2017) held in Conjunction with 20th International Conference on Medical Image Co, Québec City, QC, Canada. External link
Van Assel, C., Mangeat, G., De Leener, B., Stikov, N., Mainero, C., & Cohen-Adad, J. (2017, April). Partial volume effect correction for surface-based cortical mapping [Paper]. ISMRM 25th annual meeting & Exhibition, Honolulu, Hawai. External link
Lévy, S., Khatibi, A., Mangeat, G., Chen, J.-I., Martinu, K., Rainville, P., Stikov, N., & Cohen-Adad, J. (2017, April). Statistical combinations of T1, MTR, Mtsat and macromolecular tissue volume to improve myelin content estimation in the human spinal cord at 3T [Poster]. ISMRM 25th annual meeting & Exhibition, Honolulu, Hawai. External link
