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Boudreau, M., Karakuzu, A., Boré, A., Pinsard, B., Zelenkovski, K., Alonso Ortiz, E., Boyle, J., Bellec, L., & Cohen-Adad, J. (2024). Longitudinal reproducibility of brain and spinal cord quantitative MRI biomarkers. Imaging Neuroscience. External link
Boudreau, M., Karakuzu, A., Cohen-Adad, J., Bozkurt, E., Carr, M., Castellaro, M., Concha, L., Doneva, M., Dual, S. A., Ensworth, A., Foias, A., Fortier, V., Gabr, R. E., Gilbert, G., Glide-Hurst, C. K., Grech-Sollars, M., Hu, S., Jalnefjord, O., Jovicich, J., ... Stikov, N. (2024). Paper is not enough: Crowdsourcing the T₁ mapping common ground via the ISMRM reproducibility challenge [Dataset]. External link
Boudreau, M., Karakuzu, A., Cohen-Adad, J., Bozkurt, E., Carr, M., Castellaro, M., Concha, L., Doneva, M., Dual, S. A., Ensworth, A., Foias, A., Fortier, V., Gabr, R. E., Gilbert, G., Glide-Hurst, C. K., Grech-Sollars, M., Hu, S., Jalnefjord, O., Jovicich, J., ... ISMRM Quantitative MR Study Group, T. (2024). Repeat it without me: Crowdsourcing the T1 mapping common ground via the ISMRM reproducibility challenge. Magnetic Resonance in Medicine, 30111 (13 pages). External link
Boudreau, M., Karakuzu, A., Boré, A., Zelenkovski, K., Pinsard, B., Alonso Ortiz, E., Boyle, J., Bellec, P., & Cohen-Adad, J. (2023, June). Longitudinal stability of brain and spinal cord quantitative MRI measures [Presentation]. In ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. External link
Boudreau, M., Karakuzu, A., Boré, A., Pinsard, B., Zelenkovski, K., Alonso-Ortiz, E., Boyle, J., Bellec, P., & Cohen-Adad, J. (2023). Longitudinal stability of brain and spinal cord quantitative MRI measures [Dataset]. External link
Boudreau, M., Karakuzu, A., Boré, A., Zelenkovski, K., Pinsard, B., Alonso Ortiz, E., Boyle, J., Bellec, P., & Cohen-Adad, J. (2023, June). Longitudinal stability of brain and spinal cord structural quantitative MRI measures [Poster]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. External link
Boudreau, M., Karakuzu, A., Cohen-Adad, J., Carr, M., Doneva, M., Dual, S. A., Ennis, D. B., Ensworth, A., Foias, A., Fortier, V., Gilbert, G., Grech-Sollars, M., Holloway, L., Hu, S., Jalnefjord, O., Koken, P., Kolokotronis, A., Kukran, S., Lee, N., ... Stikov, N. (2023, June). Phantom results of the ISMRM Joint RRSG-qMRSG reproducibility challenge on T1 mapping [Paper]. ISMRM & ISMRT annual Meeting & Exhibition, Toronto, ON, Canada. External link
Boudreau, M., Karakuzu, A., Cohen-Adad, J., Bozkurt, E., Carr, M., Castellaro, M., Concha, L., Doneva, M., Dual, S., Ensworth, A., Foias, A., Fortier, V., Gabr, R. E., Gilbert, G., Glide-Hurst, C. K., Grech-Sollars, M., Hu, S., Jalnefjord, O., Jovicich, J., ... Stikov, N. (2023). Results of the ISMRM 2020 joint Reproducible Research & Quantitative MR study groups reproducibility challenge on phantom and human brain T₁ mapping [Dataset]. External link
Blostein, N., Karakuzu, A., Samson, P., Stikov, N., & Cohen-Adad, J. (2023, July). Vendor-neutral automated acquisition workflow for spinal cord MRI [Poster]. OHBM 2023, Montreal, Qc, Canada. External link
Badji, A., Adrián, N. C., Karakuzu, A., Duval, T., Desjardins-Crépeau, L., Parizet, M., Joubert, S., Bherer, L., Lamarre-Cliche, M., Stikov, N., Cohen-Adad, J., & Girouard, H. (2020). Arterial stiffness cut-off value and white matter integrity in the elderly. Neuroimage-Clinical, 26, 102007 (11 pages). External link
Badj, A., de la Colina, A. N., Boshkovski, T., Sabra, D., Karakuzu, A., Robitaille-Grou, M.-C., Gros, C., Joubert, S., Bherer, L., Lamarre-Cliche, M., Stikov, N., Gauthier, C. J., Cohen-Adad, J., & Girouard, H. (2020). A Cross-Sectional Study on the Impact of Arterial Stiffness on the Corpus Callosum, a Key White Matter Tract Implicated in Alzheimer's Disease. Journal of Alzheimers Disease, 77(2), 591-605. External link
Badji, A., Noriega de la Colina, A., Karakuzu, A., Duval, T., Desjardins-Crépeau, L., Joubert, S., Bherer, L., Lamarre-Cliche, M., Stikov, N., Girouard, H., & Cohen-Adad, J. (2019, May). Arterial stiffness and white matter integrity in the elderly : a diffusion tensor and magnetization transfer imaging study [Poster]. ISMRM 27th Annual Meeting & Exhibition, Montréal, Qc. External link
Badji, A., de la Colina, A. N., Karakuzu, A., Duval, T., Desjardins-Crepeau, L., Joubert, S., Bherer, L., Lamarre-Cliche, M., Stikov, N., Girouard, H., & Cohen-Adad, J. (2019). Arterial stiffness and white matter integrity in the elderly: a diffusion tensor and magnetization transfer imaging study. NeuroImage, 186, 577-585. External link
DuPre, E., Holdgraf, C., Karakuzu, A., Tetrel, L., Bellec, P., Stikov, N., & Poline, J.-B. (2022). Beyond advertising: New infrastructures for publishing integrated research objects. PLOS Computational Biology, 18(1), e1009651 (7 pages). Available
Harding, R., Bermudez, P., Bernier, A., Beauvais, M. J.S., Bellec, P., Hill, S., Karakuzu, A., Knoppers, B. M., Pavlidis, P., Poline, J.-B., Roskams, J., Stikov, N., Stone, J., Strother, S. C., & Evans, A. C. (2023). The Canadian Open Neuroscience Platform—An open science framework for the neuroscience community. PLOS Computational Biology, 19(7), e1011230 (14 pages). Available
Karakuzu, A., Boudreau, M., & Stikov, N. (2024). Reproducible Research Practices in Magnetic Resonance Neuroimaging: A Review Informed by Advanced Language Models. Magnetic Resonance in Medical Sciences, 0174 (16 pages). External link
Karakuzu, A., Arpak, A., & Yucesoy, C. A. (2023). In-vivo along muscle fascicle strain heterogeneity is not affected by image registration parameters: Robustness testing of combined magnetic resonance-diffusion tensor imaging method. Journal of the Mechanical Behavior of Biomedical Materials, 139, 105681 (11 pages). External link
Karakuzu, A. (2022). Bringing Quantitative Magnetic Resonance Imaging Under One Umbrella [Ph.D. thesis, Polytechnique Montréal]. Available
Karakuzu, A., Biswas, L., Cohen-Adad, J., & Stikov, N. (2022). Vendor-neutral sequences and fully transparent workflows improve inter-vendor reproducibility of quantitative MRI. Magnetic Resonance in Medicine, 88(3), 1212-1228. External link
Karakuzu, A., Hollander, G., Appelhof, S., Auer, T., Boudreau, M., Feingold, F., Khan, A. R., Lazari, A., Phillips, C., Stikov, N., & Whitaker, K. (2020, August). A joint-community effort to standardize quantitative MRI data : update from the BIDS extension proposal [Presentation]. In 2020 Joint annual meeting ISMRM & ISMRT. External link
Karakuzu, A., Boudreau, M., Duval, T., Boshkovski, T., Leppert, I., Cabana, J.-F., Gagnon, I., Beliveau, P., Pike, G. B., Cohen-Adad, J., & Stikov, N. (2020). qMRLab: Quantitative MRI analysis, under one umbrella. Journal of Open Source Software, 5(53), 2343 (4 pages). Available
Karakuzu, A., Boudreau, M., Cohen-Adad, J., & Stikov, N. (2020, August). Thinking outside the black box: A fully transparent T1 mapping pipeline [Poster]. 2020 Joint annual meeting ISMRM & ISMRT. External link
Karakuzu, A. (2020). VFA T1 mapping | RTHawk (open) vs Siemens (commercial) [Dataset]. External link
Mancini, M., Karakuzu, A., Cohen-Adad, J., Cercignani, M., Nichols, T., & Stikov, N. (2022). An interactive meta-analysis of MRI biomarkers of myelin [Dataset]. External link
Maier, O., Baete, S. H., Fyrdahl, A., Hammernik, K., Harrevelt, S., Kasper, L., Karakuzu, A., Loecher, M., Patzig, F., Tian, Y., Wang, K., Gallichan, D., Uecker, M., & Knoll, F. (2021). CG-SENSE revisited: Results from the first ISMRM reproducibility challenge. Magnetic Resonance in Medicine, 85(4), 1821-1839. External link
Mancini, M., Karakuzu, A., Cohen-Adad, J., Cercignani, M., Nichols, T. E., & Stikov, N. (2020). An interactive meta-analysis of MRI biomarkers of myelin. Elife, 9, e61523 (23 pages). External link
Maier, O., Baete, S. H., Fyrdahl, A., Hammernik, K., Harrevelt, S., Kasper, L., Karakuzu, A., Loecher, M., Patzig, F., Tian, Y., Wang, K., Gallichan, D., Uecker, M., & Knoll, F. (2020). ISMRM Reproducible Research Study Group: Data for the paper "CG-SENSE revisited: Results from the first ISMRM reproducibility challenge" [Dataset]. External link
Niso, G., Botvinik-Nezer, R., Appelhoff, S., De la Vega, A., Esteban, O., Etzel, J. A., Finc, K., Ganz, M., Gau, R., Halchenko, Y. O., Herholz, P., Karakuzu, A., Keator, D. B., Markiewicz, C. J., Maumet, C., Pernet, C. R., Pestilli, F., Queder, N., Schmitt, T., ... Rieger, J. W. (2022). Open and reproducible neuroimaging: From study inception to publication. NeuroImage, 263, 119623 (19 pages). Available
Poldrack, R. A., Markiewicz, C. J., Appelhoff, S., Ashar, Y. K., Auer, T., Baillet, S., Bansal, S., Beltrachini, L., Benar, C. G., Bertazzoli, G., Bhogawar, S., Blair, R. W., Bortoletto, M., Boudreau, M., Brooks, T. L., Calhoun, V. D., Castelli, F. M., Clement, P., Cohen, A. L., ... Gorgolewski, K. J. (2024). The past, present, and future of the brain imaging data structure (BIDS). Imaging Neuroscience, 2, 00103 (19 pages). External link
